CAPRIUserGuide
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1. Overview of the CAPRI Platform
2. Using Slurm
3. SLURM Job Examples
4. SLURM Troubleshooting
5. Using Singularity
6. Singularity workflow
7. Singularity Examples
CAPRIUserGuide
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CAPRI User Guide
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CAPRI User Guide
¶
1. Overview of the CAPRI Platform
1.1. Acknowledge the CAPRI platform / Scientific citations
1.2. Contributors
2. Using Slurm
2.1. Slurm Partitions
2.1.1. Which partition should I use?
2.2. Slurm Jobs
2.2.1. Dissection of the job file
2.2.2. Slurm mandatory options
2.2.3. A more complete job
2.3. SLURM Interaction
2.3.1. Submit a job
2.3.2. Checking job status
2.3.3. Checking running jobs
2.3.4. Remove a job
2.3.5. Job accounting
2.3.6. Job efficiency
3. SLURM Job Examples
3.1. MPI job
3.2. OpenMP job
3.3. GPU Job
3.4. Singularity Job
3.5. Singularity job using GPU
4. SLURM Troubleshooting
5. Using Singularity
5.1. Why singularity?
6. Singularity workflow
6.1. Building the singularity image
6.2. Running the singularity image locally
6.3. Running the singularity image on CAPRI
7. Singularity Examples
7.1. Tensorflow + python packages
7.1.1. Description
7.1.2. Singularity file
7.1.3. Build and run
7.2. Reuse and customize a local image
7.2.1. Description
7.2.2. Singularity file
7.2.3. Build and run
Indices and tables
¶
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